This R factor corresponds to the relative motions occurred during molecular dynamics (see more at flexibility ).
Molecular Dynamics Molecular dynamics is conceptually simple, yet extremely powerful.
This finding is also supported by molecular dynamics simulations.
Since there are many steric clashes, we will need to run a short minimisation of this structure before starting molecular dynamics.
The ANATRA menu holds a set of options that allow you to analyze GROMOS molecular dynamics trajectories.
